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SRZ10004442 Sample ID 186
| Paper identifier | Bahat2019targeting |
| SRP accession | SRP218860 |
| GEO accession | GSE136024 |
| Samples | SRR10004442 |
| SRR10004443 | |
| SRR10004444 | |
| SRR10004445 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | random primed |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HeLa |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | Spt5-Pol II small-molecule inhibitor 21 (50 microM) | -90 min | 0 min | 90 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Unstranded - library prep may not have been stranded (unclear in protocol), but good data otherwise |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 84 |
| Read depth after trimming | 138,476,461 |
| Duplication proportion | 0.51537 |
| Proportion reads mapped | 0.9079 |
| Exon/intron ratio | 3.81862 |
| Unique read proportion | 0.6395 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | 24543 |
| # Promoter dREG bidirectionals | 4572 |
| # Intronic dREG bidirectionals | 8759 |
| # Intergenic dREG bidirectionals | 9802 |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |