DBNascent | Samples

SRZ10354600 Sample ID 1041

**Data sources**
Paper identifier	Jaeger2020selective
SRP accession	SRP227189
GEO accession	GSE139462
Samples	SRR10354600
	SRR10354601

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	D. melanogaster
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	239 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	KBM7
Clone/Individual
Strain
Genotype	Med14 dTAG-inducible degron
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Labeled as experiment MJ-19-14, mentions to only cross-compare within experiment
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	64
Read depth after trimming	108,005,435
Duplication proportion	0.63384
Proportion reads mapped	0.8914
Exon/intron ratio	3.33795
Unique read proportion	0.67081

**Bidirectionals**
Total # Tfit bidirectionals	28852
# Promoter Tfit bidirectionals	15323
# Intronic Tfit bidirectionals	10316
# Intergenic Tfit bidirectionals	4210
Total # dREG bidirectionals	27673
# Promoter dREG bidirectionals	8438
# Intronic dREG bidirectionals	12423
# Intergenic dREG bidirectionals	6000
Part of Tfit master merge?	True
Part of dREG master merge?	True