Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRZ10354602 Sample ID 1042
| Paper identifier | Jaeger2020selective |
| SRP accession | SRP227189 |
| GEO accession | GSE139462 |
| Samples | SRR10354602 |
| SRR10354603 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | D. melanogaster |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | KBM7 |
| Clone/Individual | |
| Strain | |
| Genotype | Med14 dTAG-inducible degron |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | -1 hr | 0 hr | 1 hr |
| Pipeline info and software versions | |
| Sample notes | Labeled as experiment MJ-19-14, mentions to only cross-compare within experiment |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 64 |
| Read depth after trimming | 109,389,389 |
| Duplication proportion | 0.60051 |
| Proportion reads mapped | 0.8919 |
| Exon/intron ratio | 3.42262 |
| Unique read proportion | 0.70236 |
| Total # Tfit bidirectionals | 29943 |
| # Promoter Tfit bidirectionals | 15709 |
| # Intronic Tfit bidirectionals | 10481 |
| # Intergenic Tfit bidirectionals | 4756 |
| Total # dREG bidirectionals | 30278 |
| # Promoter dREG bidirectionals | 8625 |
| # Intronic dREG bidirectionals | 13809 |
| # Intergenic dREG bidirectionals | 7020 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |