DBNascent | Samples

SRZ10354604 Sample ID 1043

**Data sources**
Paper identifier	Jaeger2020selective
SRP accession	SRP227189
GEO accession	GSE139462
Samples	SRR10354604
	SRR10354605

**Technical details**
QC score	3
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	D. melanogaster
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	172 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	836 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	KBM7
Clone/Individual
Strain
Genotype	Med14 dTAG-inducible degron
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dTAG7 (500 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Labeled as experiment MJ-19-14, mentions to only cross-compare within experiment
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	64
Read depth after trimming	104,224,331
Duplication proportion	0.71884
Proportion reads mapped	0.8487
Exon/intron ratio	2.7129
Unique read proportion	0.60266

**Bidirectionals**
Total # Tfit bidirectionals	21085
# Promoter Tfit bidirectionals	11167
# Intronic Tfit bidirectionals	8090
# Intergenic Tfit bidirectionals	2033
Total # dREG bidirectionals	19259
# Promoter dREG bidirectionals	8023
# Intronic dREG bidirectionals	7747
# Intergenic dREG bidirectionals	3177
Part of Tfit master merge?	True
Part of dREG master merge?	True