DBNascent | Samples

SRZ10354616 Sample ID 1049

**Data sources**
Paper identifier	Jaeger2020selective
SRP accession	SRP227189
GEO accession	GSE139462
Samples	SRR10354616
	SRR10354617

**Technical details**
QC score	3
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	D. melanogaster
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	180 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	810 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	KBM7
Clone/Individual
Strain
Genotype	Med14 dTAG-inducible degron
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	NVP2 (500 nM)	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes	Labeled as experiment MJ-19-30, mentions to only cross-compare within experiment
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	65
Read depth after trimming	92,193,953
Duplication proportion	0.65754
Proportion reads mapped	0.904
Exon/intron ratio	2.35889
Unique read proportion	0.46853

**Bidirectionals**
Total # Tfit bidirectionals	14829
# Promoter Tfit bidirectionals	7940
# Intronic Tfit bidirectionals	6012
# Intergenic Tfit bidirectionals	1406
Total # dREG bidirectionals	18740
# Promoter dREG bidirectionals	8390
# Intronic dREG bidirectionals	8018
# Intergenic dREG bidirectionals	2651
Part of Tfit master merge?	True
Part of dREG master merge?	True