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SRZ10354641 Sample ID 1055
| Paper identifier | Jaeger2020selective |
| SRP accession | SRP227191 |
| GEO accession | GSE139463 |
| Samples | SRR10354641 |
| SRR10354642 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | TT-seq |
| Library prep | random primed |
| Spike-in | SIRV Set 3 |
| Single/Paired end | paired |
| Raw strandedness | read1 forward |
| Reverse complemented? | True |
| Mapped strandedness | read1 forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | KBM7 |
| Clone/Individual | |
| Strain | |
| Genotype | Med14 dTAG-inducible degron |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | 4-thiouridine (500 microM) | -5 min | 0 min | 5 min |
| treatment | dTAG7 (500 nM) | -1 hr | 0 hr | 1 hr |
| Pipeline info and software versions | |
| Sample notes | Labeled as experiment MJ-19-1, mentions to only cross-compare within experiments |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 1 |
| Raw read length | 35 |
| Read depth after trimming | 102,338,504 |
| Duplication proportion | 0.25037 |
| Proportion reads mapped | 0.9607 |
| Exon/intron ratio | 2.42056 |
| Unique read proportion | 0.82982 |
| Total # Tfit bidirectionals | 14348 |
| # Promoter Tfit bidirectionals | 5049 |
| # Intronic Tfit bidirectionals | 7418 |
| # Intergenic Tfit bidirectionals | 1175 |
| Total # dREG bidirectionals | 19948 |
| # Promoter dREG bidirectionals | 4834 |
| # Intronic dREG bidirectionals | 10199 |
| # Intergenic dREG bidirectionals | 3618 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |