DBNascent | Samples

SRZ12179472 Sample ID 2888

**Data sources**
Paper identifier	Zhu2021calcium
SRP accession	SRP270993
GEO accession	GSE154051
Samples	SRR12179472
	SRR12179473

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	not noted in GEO or publication
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	43 Mb
Stranded gene read counts	TXT file	908 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	446 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ECOMG
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	neutrophil differentiation protocol	None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	No library prep specified, no polyA tails; no replicate info, assume tech reps
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	75
Read depth after trimming	37,516,123
Duplication proportion	0.75439
Proportion reads mapped	0.6952
Exon/intron ratio	3.7089
Unique read proportion	0.28121

**Bidirectionals**
Total # Tfit bidirectionals	12647
# Promoter Tfit bidirectionals	4967
# Intronic Tfit bidirectionals	4355
# Intergenic Tfit bidirectionals	1596
Total # dREG bidirectionals	10330
# Promoter dREG bidirectionals	4242
# Intronic dREG bidirectionals	3089
# Intergenic dREG bidirectionals	1908
Part of Tfit master merge?	True
Part of dREG master merge?	True