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SRZ1482436 Sample ID 2665
| Paper identifier | Williams2015pausing |
| SRP accession | SRP043635 |
| GEO accession | GSE43390 |
| Samples | SRR1482436 |
| SRR1482437 | |
| SRR1482438 | |
| SRR1482439 | |
| SRR1482440 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 forward |
| Reverse complemented? | True |
| Mapped strandedness | read1 forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 194 Mb |
| Stranded gene read counts | TXT file | 928 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | C2 |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | rep1 seems to be split into 5 SRRs |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 50 |
| Read depth after trimming | 87,218,394 |
| Duplication proportion | 0.63844 |
| Proportion reads mapped | 0.7313 |
| Exon/intron ratio | 3.06389 |
| Unique read proportion | 0.46947 |
| Total # Tfit bidirectionals | 44638 |
| # Promoter Tfit bidirectionals | 10100 |
| # Intronic Tfit bidirectionals | 15511 |
| # Intergenic Tfit bidirectionals | 14929 |
| Total # dREG bidirectionals | 39560 |
| # Promoter dREG bidirectionals | 6421 |
| # Intronic dREG bidirectionals | 13419 |
| # Intergenic dREG bidirectionals | 15902 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |