DBNascent | Samples

SRZ1482436 Sample ID 2665

**Data sources**
Paper identifier	Williams2015pausing
SRP accession	SRP043635
GEO accession	GSE43390
Samples	SRR1482436
	SRR1482437
	SRR1482438
	SRR1482439
	SRR1482440

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 forward
Reverse complemented?	True
Mapped strandedness	read1 forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	194 Mb
Stranded gene read counts	TXT file	928 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	C2
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	rep1 seems to be split into 5 SRRs
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	87,218,394
Duplication proportion	0.63844
Proportion reads mapped	0.7313
Exon/intron ratio	3.06389
Unique read proportion	0.46947

**Bidirectionals**
Total # Tfit bidirectionals	44638
# Promoter Tfit bidirectionals	10100
# Intronic Tfit bidirectionals	15511
# Intergenic Tfit bidirectionals	14929
Total # dREG bidirectionals	39560
# Promoter dREG bidirectionals	6421
# Intronic dREG bidirectionals	13419
# Intergenic dREG bidirectionals	15902
Part of Tfit master merge?	True
Part of dREG master merge?	True