DBNascent | Samples

SRZ1482441 Sample ID 2665

**Data sources**
Paper identifier	Williams2015pausing
SRP	SRP043635
Samples	SRR1482441
	SRR1482442
	SRR1482443
	SRR1482444

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	166 Mb
Stranded gene read counts	TXT file	925 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	C2
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	rep2 seems to be split into 4 SRRs
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	68,256,163
Duplication proportion	0.60448
Proportion reads mapped	0.727
Exon/intron ratio	3.02519
Unique read proportion	0.46607

**Bidirectionals**
Total # Tfit bidirectionals	42436
# Promoter Tfit bidirectionals	9833
# Intronic Tfit bidirectionals	14883
# Intergenic Tfit bidirectionals	13696
Total # dREG bidirectionals	35589
# Promoter dREG bidirectionals	6226
# Intronic dREG bidirectionals	11765
# Intergenic dREG bidirectionals	14023
Part of Tfit master merge?	True
Part of dREG master merge?	True