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SRZ1554311 Sample ID 495
| Paper identifier | Core2014analysis |
| SRP accession | SRP045616 |
| GEO accession | GSE60455 |
| Samples | SRR1554311 |
| SRR1554312 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 912 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 22 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 5 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | K562 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 100 |
| Read depth after trimming | 446,848,236 |
| Duplication proportion | 0.68616 |
| Proportion reads mapped | 0.9492 |
| Exon/intron ratio | 2.73542 |
| Unique read proportion | 0.8192 |
| Total # Tfit bidirectionals | 38434 |
| # Promoter Tfit bidirectionals | 15935 |
| # Intronic Tfit bidirectionals | 12595 |
| # Intergenic Tfit bidirectionals | 10061 |
| Total # dREG bidirectionals | 106561 |
| # Promoter dREG bidirectionals | 9322 |
| # Intronic dREG bidirectionals | 51556 |
| # Intergenic dREG bidirectionals | 42873 |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |