DBNascent | Samples

SRZ1554311 Sample ID 495

**Data sources**
Paper identifier	Core2014analysis
SRP accession	SRP045616
GEO accession	GSE60455
Samples	SRR1554311
	SRR1554312

**Technical details**
QC score	3
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	912 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	22 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	5 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	K562
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	100
Read depth after trimming	446,848,236
Duplication proportion	0.68616
Proportion reads mapped	0.9492
Exon/intron ratio	2.73542
Unique read proportion	0.8192

**Bidirectionals**
Total # Tfit bidirectionals	38434
# Promoter Tfit bidirectionals	15935
# Intronic Tfit bidirectionals	12595
# Intergenic Tfit bidirectionals	10061
Total # dREG bidirectionals	106561
# Promoter dREG bidirectionals	9322
# Intronic dREG bidirectionals	51556
# Intergenic dREG bidirectionals	42873
Part of Tfit master merge?	False
Part of dREG master merge?	False