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SRZ1575923 Sample ID 1814
| Paper identifier | Mayer2015native |
| SRP accession | SRP047174 |
| GEO accession | GSE61332 |
| Samples | SRR1575923 |
| SRR1575924 | |
| SRR1575925 | |
| SRR1575926 | |
| SRR1575927 | |
| SRR1575928 | |
| SRR1928223 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | NET-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 46 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HEK293T |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | unique hexamers were ligated first (before circularization) to remove PCR duplicates computationally |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 2 |
| Raw read length | 50 |
| Read depth after trimming | 691,129,043 |
| Duplication proportion | 0.94903 |
| Proportion reads mapped | 0.1407 |
| Exon/intron ratio | 4.24902 |
| Unique read proportion | 0.07853 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |