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SRZ1575932 Sample ID 1816
| Paper identifier | Mayer2015native |
| SRP accession | SRP047174 |
| GEO accession | GSE61332 |
| Samples | SRR1575932 |
| SRR1575933 | |
| SRR1575934 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | NET-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 45 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HeLa S3 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | flavopiridol (1 microM) | -1 hr | 0 hr | 1 hr |
| Pipeline info and software versions | |
| Sample notes | unique hexamers were ligated first (before circularization) to remove PCR duplicates computationally |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 3 |
| Raw read length | 50 |
| Read depth after trimming | 290,953,610 |
| Duplication proportion | 0.90435 |
| Proportion reads mapped | 0.1801 |
| Exon/intron ratio | 5.63396 |
| Unique read proportion | 0.12364 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |