DBNascent | Samples

SRZ1648896 Sample ID 2104

**Data sources**
Paper identifier	Puc2015ligand
SRP	SRP049720
Samples	SRR1648896
	SRR1648897

**Technical details**
QC score	2
Replicate	3
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	106 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	819 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	LNCaP
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	44,432,835
Duplication proportion	0.62618
Proportion reads mapped	0.8598
Exon/intron ratio	2.39626
Unique read proportion	0.45687

**Bidirectionals**
Total # Tfit bidirectionals	23210
# Promoter Tfit bidirectionals	10165
# Intronic Tfit bidirectionals	9139
# Intergenic Tfit bidirectionals	4004
Total # dREG bidirectionals	18984
# Promoter dREG bidirectionals	8416
# Intronic dREG bidirectionals	7288
# Intergenic dREG bidirectionals	3483
Part of Tfit master merge?	True
Part of dREG master merge?	True