DBNascent | Samples

SRZ1693609 Sample ID 655

**Data sources**
Paper identifier	Duttke2015human
SRP accession	SRP050563
GEO accession	GSE63872
Samples	SRR1693609
	SRR1693610

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-cap
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	67 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	794 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	5' GRO-seq
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	51
Read depth after trimming	66,297,281
Duplication proportion	0.85171
Proportion reads mapped	0.9263
Exon/intron ratio	1.93182
Unique read proportion	0.23188

**Bidirectionals**
Total # Tfit bidirectionals	21140
# Promoter Tfit bidirectionals	6294
# Intronic Tfit bidirectionals	10028
# Intergenic Tfit bidirectionals	4522
Total # dREG bidirectionals	18433
# Promoter dREG bidirectionals	7787
# Intronic dREG bidirectionals	7649
# Intergenic dREG bidirectionals	3753
Part of Tfit master merge?	True
Part of dREG master merge?	True