DBNascent | Samples

SRZ1693611 Sample ID 656

**Data sources**
Paper identifier	Duttke2015human
SRP	SRP050563
Samples	SRR1693611
	SRR1693612

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	73 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	370 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	3
Raw read length	51
Read depth after trimming	67,957,823
Duplication proportion	0.80214
Proportion reads mapped	0.8529
Exon/intron ratio	5.039
Unique read proportion	0.22935

**Bidirectionals**
Total # Tfit bidirectionals	13978
# Promoter Tfit bidirectionals	5689
# Intronic Tfit bidirectionals	5806
# Intergenic Tfit bidirectionals	1374
Total # dREG bidirectionals	8557
# Promoter dREG bidirectionals	4234
# Intronic dREG bidirectionals	2945
# Intergenic dREG bidirectionals	1279
Part of Tfit master merge?	True
Part of dREG master merge?	True