DBNascent | Samples

SRZ1745523 Sample ID 702

**Data sources**
Paper identifier	Estaras2015smad
SRP	SRP051788
Samples	SRR1745523
	SRR1745524

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	87 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	462 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	ESC
Clone/Individual	H1
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Labeled (+/- chains) - runs seem to be split in two by lane, thus technical replicates
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	51
Read depth after trimming	51,237,552
Duplication proportion	0.63646
Proportion reads mapped	0.7289
Exon/intron ratio	3.0368
Unique read proportion	0.40681

**Bidirectionals**
Total # Tfit bidirectionals	18939
# Promoter Tfit bidirectionals	6264
# Intronic Tfit bidirectionals	8319
# Intergenic Tfit bidirectionals	3375
Total # dREG bidirectionals	10736
# Promoter dREG bidirectionals	4464
# Intronic dREG bidirectionals	3867
# Intergenic dREG bidirectionals	2397
Part of Tfit master merge?	True
Part of dREG master merge?	True