DBNascent | Samples

SRZ1810067 Sample ID 576

**Data sources**
Paper identifier	Danko2015identification
SRP	SRP055129
Samples	SRR1810067
	SRR1810068
	SRR1810069
	SRR1810070

**Technical details**
QC score	3
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	162 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	CD4+ T cell
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO/ethanol	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	86,475,834
Duplication proportion	0.68305
Proportion reads mapped	0.8287
Exon/intron ratio	3.9518
Unique read proportion	0.6225

**Bidirectionals**
Total # Tfit bidirectionals	30490
# Promoter Tfit bidirectionals	12801
# Intronic Tfit bidirectionals	12694
# Intergenic Tfit bidirectionals	5229
Total # dREG bidirectionals	26680
# Promoter dREG bidirectionals	8371
# Intronic dREG bidirectionals	12275
# Intergenic dREG bidirectionals	5254
Part of Tfit master merge?	True
Part of dREG master merge?	True