Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRZ1810067 Sample ID 576
| Paper identifier | Danko2015identification |
| SRP accession | SRP055129 |
| GEO accession | GSE66031 |
| Samples | SRR1810067 |
| SRR1810068 | |
| SRR1810069 | |
| SRR1810070 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | primary cell |
| Cell type | CD4+ T cell |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO/ethanol | -30 min | 0 min | 30 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 50 |
| Read depth after trimming | 86,475,834 |
| Duplication proportion | 0.68305 |
| Proportion reads mapped | 0.8287 |
| Exon/intron ratio | 3.9518 |
| Unique read proportion | 0.6225 |
| Total # Tfit bidirectionals | 30490 |
| # Promoter Tfit bidirectionals | 12801 |
| # Intronic Tfit bidirectionals | 12694 |
| # Intergenic Tfit bidirectionals | 5229 |
| Total # dREG bidirectionals | 26680 |
| # Promoter dREG bidirectionals | 8371 |
| # Intronic dREG bidirectionals | 12275 |
| # Intergenic dREG bidirectionals | 5254 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |