DBNascent | Samples

SRZ1950493 Sample ID 2459

**Data sources**
Paper identifier	Teppo2016genome
SRP accession	SRP056802
GEO accession	GSE67519
Samples	SRR1950493
	SRR1950494

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	90 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	846 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	Nalm6
Clone/Individual
Strain
Genotype	dox-inducible luciferase (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	doxycycline (500 ng/mL)	-24 hr	0 hr	1 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	51
Read depth after trimming	35,468,697
Duplication proportion	0.58953
Proportion reads mapped	0.9375
Exon/intron ratio	3.76923
Unique read proportion	0.49388

**Bidirectionals**
Total # Tfit bidirectionals	24040
# Promoter Tfit bidirectionals	10949
# Intronic Tfit bidirectionals	9419
# Intergenic Tfit bidirectionals	4042
Total # dREG bidirectionals	19568
# Promoter dREG bidirectionals	8219
# Intronic dREG bidirectionals	7763
# Intergenic dREG bidirectionals	3622
Part of Tfit master merge?	True
Part of dREG master merge?	True