DBNascent | Samples

SRZ1950501 Sample ID 2463

**Data sources**
Paper identifier	Teppo2016genome
SRP accession	SRP056802
GEO accession	GSE67519
Samples	SRR1950501
	SRR1950502

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	87 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	760 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	Nalm6
Clone/Individual
Strain
Genotype	dox-inducible Etv6-Runx1 fusion (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	doxycycline (500 ng/mL)	-4 hr	0 hr	4 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	51
Read depth after trimming	33,403,322
Duplication proportion	0.56909
Proportion reads mapped	0.9259
Exon/intron ratio	3.52375
Unique read proportion	0.48869

**Bidirectionals**
Total # Tfit bidirectionals	25125
# Promoter Tfit bidirectionals	10619
# Intronic Tfit bidirectionals	10032
# Intergenic Tfit bidirectionals	4555
Total # dREG bidirectionals	17570
# Promoter dREG bidirectionals	7341
# Intronic dREG bidirectionals	6865
# Intergenic dREG bidirectionals	3342
Part of Tfit master merge?	True
Part of dREG master merge?	True