Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRZ1950509 Sample ID 2467
| Paper identifier | Teppo2016genome |
| SRP accession | SRP056802 |
| GEO accession | GSE67519 |
| Samples | SRR1950509 |
| SRR1950510 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | Nalm6 |
| Clone/Individual | |
| Strain | |
| Genotype | dox-inducible Etv6-Runx1 fusion (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | doxycycline (500 ng/mL) | -24 hr | 0 hr | 1 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 51 |
| Read depth after trimming | 35,413,231 |
| Duplication proportion | 0.63015 |
| Proportion reads mapped | 0.9329 |
| Exon/intron ratio | 4.21684 |
| Unique read proportion | 0.42014 |
| Total # Tfit bidirectionals | 22560 |
| # Promoter Tfit bidirectionals | 9359 |
| # Intronic Tfit bidirectionals | 8970 |
| # Intergenic Tfit bidirectionals | 4327 |
| Total # dREG bidirectionals | 18261 |
| # Promoter dREG bidirectionals | 7736 |
| # Intronic dREG bidirectionals | 6908 |
| # Intergenic dREG bidirectionals | 3693 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |