DBNascent | Samples

SRZ1950511 Sample ID 2467

**Data sources**
Paper identifier	Teppo2016genome
SRP	SRP056802
Samples	SRR1950511
	SRR1950512

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	91 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	872 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	Nalm6
Clone/Individual
Strain
Genotype	dox-inducible Etv6-Runx1 fusion R518Q (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	doxycycline (500 ng/mL)	-24 hr	0 hr	1 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	51
Read depth after trimming	31,746,938
Duplication proportion	0.5166
Proportion reads mapped	0.932
Exon/intron ratio	3.93455
Unique read proportion	0.5267

**Bidirectionals**
Total # Tfit bidirectionals	25584
# Promoter Tfit bidirectionals	12690
# Intronic Tfit bidirectionals	9568
# Intergenic Tfit bidirectionals	4118
Total # dREG bidirectionals	20066
# Promoter dREG bidirectionals	8063
# Intronic dREG bidirectionals	8129
# Intergenic dREG bidirectionals	3736
Part of Tfit master merge?	True
Part of dREG master merge?	True