DBNascent | Samples

SRZ1950513 Sample ID 2468

**Data sources**
Paper identifier	Teppo2016genome
SRP	SRP056802
Samples	SRR1950513
	SRR1950514

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	66 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	670 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	Nalm6
Clone/Individual
Strain
Genotype	dox-inducible Etv6-Runx1 fusion R518Q (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	doxycycline (500 ng/mL)	-24 hr	0 hr	1 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	51
Read depth after trimming	26,289,584
Duplication proportion	0.60067
Proportion reads mapped	0.9249
Exon/intron ratio	4.16364
Unique read proportion	0.43713

**Bidirectionals**
Total # Tfit bidirectionals	18160
# Promoter Tfit bidirectionals	8380
# Intronic Tfit bidirectionals	7327
# Intergenic Tfit bidirectionals	2555
Total # dREG bidirectionals	15562
# Promoter dREG bidirectionals	7772
# Intronic dREG bidirectionals	5671
# Intergenic dREG bidirectionals	2390
Part of Tfit master merge?	True
Part of dREG master merge?	True