DBNascent | Samples

SRZ2820481 Sample ID 2641

**Data sources**
Paper identifier	Wei2016long
SRP	SRP065285
Samples	SRR2820481
	SRR2820482

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	170 Mb
Stranded gene read counts	TXT file	931 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	NSPC
Clone/Individual
Strain	129/Sve
Genotype	Atm -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	triamcinolone acetate-inducible Atm -/- GR-I-SceI 25xI-SceI-c-Myc CRISPR construct induced for 3.5 days with 10 microM triamcinolone acetate
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	51
Read depth after trimming	61,763,545
Duplication proportion	0.47154
Proportion reads mapped	0.8294
Exon/intron ratio	2.39006
Unique read proportion	0.76361

**Bidirectionals**
Total # Tfit bidirectionals	36679
# Promoter Tfit bidirectionals	10538
# Intronic Tfit bidirectionals	13630
# Intergenic Tfit bidirectionals	7259
Total # dREG bidirectionals	30864
# Promoter dREG bidirectionals	6252
# Intronic dREG bidirectionals	12749
# Intergenic dREG bidirectionals	7567
Part of Tfit master merge?	True
Part of dREG master merge?	True