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SRZ2820483 Sample ID 2643
| Paper identifier | Wei2016long |
| SRP accession | SRP065285 |
| GEO accession | GSE74356 |
| Samples | SRR2820483 |
| SRR2820484 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 205 Mb |
| Stranded gene read counts | TXT file | 932 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | NSPC |
| Clone/Individual | |
| Strain | 129/Sve |
| Genotype | Atm -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | triamcinolone acetate-inducible Atm -/- GR-I-SceI 25xI-SceI-c-Myc CRISPR construct induced for 3.5 days with 10 microM triamcinolone acetate |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 1 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 70,668,642 |
| Duplication proportion | 0.44101 |
| Proportion reads mapped | 0.8405 |
| Exon/intron ratio | 2.50094 |
| Unique read proportion | 0.78366 |
| Total # Tfit bidirectionals | 39435 |
| # Promoter Tfit bidirectionals | 10895 |
| # Intronic Tfit bidirectionals | 14734 |
| # Intergenic Tfit bidirectionals | 8330 |
| Total # dREG bidirectionals | 34838 |
| # Promoter dREG bidirectionals | 6403 |
| # Intronic dREG bidirectionals | 14814 |
| # Intergenic dREG bidirectionals | 9114 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |