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SRZ2820487 Sample ID 2645
| Paper identifier | Wei2016long |
| SRP accession | SRP065285 |
| GEO accession | GSE74356 |
| Samples | SRR2820487 |
| SRR2820488 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 110 Mb |
| Stranded gene read counts | TXT file | 929 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 1011 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | NSPC |
| Clone/Individual | |
| Strain | 129/Sve |
| Genotype | Xrcc4 -/-; p53 -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 48,870,873 |
| Duplication proportion | 0.62121 |
| Proportion reads mapped | 0.8674 |
| Exon/intron ratio | 2.34332 |
| Unique read proportion | 0.67917 |
| Total # Tfit bidirectionals | 28363 |
| # Promoter Tfit bidirectionals | 8999 |
| # Intronic Tfit bidirectionals | 11157 |
| # Intergenic Tfit bidirectionals | 4144 |
| Total # dREG bidirectionals | 23229 |
| # Promoter dREG bidirectionals | 6582 |
| # Intronic dREG bidirectionals | 9188 |
| # Intergenic dREG bidirectionals | 4156 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |