DBNascent | Samples

SRZ2820489 Sample ID 2646

**Data sources**
Paper identifier	Wei2016long
SRP accession	SRP065285
GEO accession	GSE74356
Samples	SRR2820489
	SRR2820490

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	245 Mb
Stranded gene read counts	TXT file	938 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	NSPC
Clone/Individual
Strain	129/Sve
Genotype	Xrcc4 -/-; p53 -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	51
Read depth after trimming	113,979,263
Duplication proportion	0.64689
Proportion reads mapped	0.89
Exon/intron ratio	2.46391
Unique read proportion	0.77469

**Bidirectionals**
Total # Tfit bidirectionals	35186
# Promoter Tfit bidirectionals	10725
# Intronic Tfit bidirectionals	12948
# Intergenic Tfit bidirectionals	7114
Total # dREG bidirectionals	39801
# Promoter dREG bidirectionals	7445
# Intronic dREG bidirectionals	17859
# Intergenic dREG bidirectionals	10266
Part of Tfit master merge?	True
Part of dREG master merge?	True