DBNascent | Samples

SRZ2820491 Sample ID 2646

**Data sources**
Paper identifier	Wei2016long
SRP	SRP065285
Samples	SRR2820491
	SRR2820492

**Technical details**
QC score	2
Replicate	3
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	176 Mb
Stranded gene read counts	TXT file	932 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	NSPC
Clone/Individual
Strain	129/Sve
Genotype	Xrcc4 -/-; p53 -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	51
Read depth after trimming	62,854,564
Duplication proportion	0.51096
Proportion reads mapped	0.8898
Exon/intron ratio	2.79813
Unique read proportion	0.76342

**Bidirectionals**
Total # Tfit bidirectionals	35325
# Promoter Tfit bidirectionals	11047
# Intronic Tfit bidirectionals	13036
# Intergenic Tfit bidirectionals	6483
Total # dREG bidirectionals	33215
# Promoter dREG bidirectionals	7290
# Intronic dREG bidirectionals	14319
# Intergenic dREG bidirectionals	7363
Part of Tfit master merge?	True
Part of dREG master merge?	True