DBNascent | Samples

SRZ2960994 Sample ID 1767

**Data sources**
Paper identifier	Magnuson2015identifying
SRP	SRP066673
Samples	SRR2960994
	SRR2960995

**Technical details**
QC score	3
Replicate	1
Protocol	other
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	127 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	529 Kb
dREG bidirectional regions	BED file	346 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	K562
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	bromouridine (2 mM)	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes	Bru-seq; replicate information unclear, but points toward technical replicates
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	52
Read depth after trimming	88,711,957
Duplication proportion	0.77505
Proportion reads mapped	0.9731
Exon/intron ratio	4.48204
Unique read proportion	0.34242

**Bidirectionals**
Total # Tfit bidirectionals	6075
# Promoter Tfit bidirectionals	1820
# Intronic Tfit bidirectionals	2922
# Intergenic Tfit bidirectionals	460
Total # dREG bidirectionals	8021
# Promoter dREG bidirectionals	2301
# Intronic dREG bidirectionals	3519
# Intergenic dREG bidirectionals	1477
Part of Tfit master merge?	True
Part of dREG master merge?	True