DBNascent | Samples

SRZ2961000 Sample ID 1770

**Data sources**
Paper identifier	Magnuson2015identifying
SRP	SRP066673
Samples	SRR2961000
	SRR2961001

**Technical details**
QC score	4
Replicate	1
Protocol	other
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	62 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	393 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	K562
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	bromouridine (2 mM)	-30 min	0 min	30 min
treatment	ultraviolet C (1 J/m^2/s)	-1900 s	-1800 s	100 s

**Extended notes**
Pipeline info and software versions
Sample notes	Bru-seq; replicate information unclear, but points toward technical replicates
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	52
Read depth after trimming	84,687,539
Duplication proportion	0.91026
Proportion reads mapped	0.973
Exon/intron ratio	3.90418
Unique read proportion	0.24132

**Bidirectionals**
Total # Tfit bidirectionals	14668
# Promoter Tfit bidirectionals	4762
# Intronic Tfit bidirectionals	8327
# Intergenic Tfit bidirectionals	1052
Total # dREG bidirectionals	9085
# Promoter dREG bidirectionals	3406
# Intronic dREG bidirectionals	3870
# Intergenic dREG bidirectionals	1417
Part of Tfit master merge?	True
Part of dREG master merge?	True