DBNascent | Samples

SRZ2961002 Sample ID 1771

**Data sources**
Paper identifier	Magnuson2015identifying
SRP	SRP066673
Samples	SRR2961002
	SRR2961003

**Technical details**
QC score	2
Replicate	1
Protocol	other
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	183 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	363 Kb
dREG bidirectional regions	BED file	368 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HF1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	bromouridine (2 mM)	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes	Bru-seq; replicate information unclear, but points toward technical replicates
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	52
Read depth after trimming	61,300,706
Duplication proportion	0.50339
Proportion reads mapped	0.9647
Exon/intron ratio	1.81134
Unique read proportion	0.70676

**Bidirectionals**
Total # Tfit bidirectionals	4154
# Promoter Tfit bidirectionals	858
# Intronic Tfit bidirectionals	2466
# Intergenic Tfit bidirectionals	378
Total # dREG bidirectionals	8552
# Promoter dREG bidirectionals	1504
# Intronic dREG bidirectionals	5404
# Intergenic dREG bidirectionals	1576
Part of Tfit master merge?	True
Part of dREG master merge?	True