DBNascent | Samples

SRZ2961012 Sample ID 1775

**Data sources**
Paper identifier	Magnuson2015identifying
SRP	SRP066673
Samples	SRR2961012
	SRR2961013
	SRR2961014
	SRR2961015

**Technical details**
QC score	3
Replicate	3
Protocol	other
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	118 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	732 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HF1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	bromouridine (2 mM)	-30 min	0 min	30 min
treatment	ultraviolet C (1 J/m^2/s)	-1820 s	-1800 s	20 s

**Extended notes**
Pipeline info and software versions
Sample notes	Bru-seq; replicate information unclear, but points toward technical replicates
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	52
Read depth after trimming	57,107,156
Duplication proportion	0.65838
Proportion reads mapped	0.9587
Exon/intron ratio	4.86087
Unique read proportion	0.45998

**Bidirectionals**
Total # Tfit bidirectionals	29195
# Promoter Tfit bidirectionals	8311
# Intronic Tfit bidirectionals	14261
# Intergenic Tfit bidirectionals	4110
Total # dREG bidirectionals	16726
# Promoter dREG bidirectionals	4733
# Intronic dREG bidirectionals	7972
# Intergenic dREG bidirectionals	2728
Part of Tfit master merge?	True
Part of dREG master merge?	True