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SRZ3031842 Sample ID 293
| Paper identifier | Booth2016divergence |
| SRP accession | SRP067557 |
| GEO accession | GSE76142 |
| Samples | SRR3031842 |
| SRR3031843 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | S. cerevisiae |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 25 Mb |
| Organism | S. pombe |
| Sample type | organism |
| Cell type | whole yeast |
| Clone/Individual | |
| Strain | 972 h- |
| Genotype | spt4 -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 2 |
| Raw read length | 51 |
| Read depth after trimming | 33,393,274 |
| Duplication proportion | 0.85086 |
| Proportion reads mapped | 0.8456 |
| Exon/intron ratio | 4.50754 |
| Unique read proportion | 0.20809 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |