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SRZ3223688 Sample ID 1061
| Paper identifier | Jager2016nuclear |
| SRP accession | SRP071728 |
| GEO accession | GSE79168 |
| Samples | SRR3223688 |
| SRR3223689 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 265 Mb |
| Stranded gene read counts | TXT file | 932 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | brown adipose tissue |
| Clone/Individual | |
| Strain | C57BL/6 |
| Genotype | Rev-erb-alpha -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Replicate information unclear |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 147,805,090 |
| Duplication proportion | 0.53204 |
| Proportion reads mapped | 0.6315 |
| Exon/intron ratio | 2.75262 |
| Unique read proportion | 0.61551 |
| Total # Tfit bidirectionals | 22806 |
| # Promoter Tfit bidirectionals | 10140 |
| # Intronic Tfit bidirectionals | 6485 |
| # Intergenic Tfit bidirectionals | 4219 |
| Total # dREG bidirectionals | 32064 |
| # Promoter dREG bidirectionals | 7643 |
| # Intronic dREG bidirectionals | 13103 |
| # Intergenic dREG bidirectionals | 8560 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |