DBNascent | Samples

SRZ3223690 Sample ID 1062

**Data sources**
Paper identifier	Jager2016nuclear
SRP	SRP071728
Samples	SRR3223690
	SRR3223691

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	446 Mb
Stranded gene read counts	TXT file	940 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	brown adipose tissue
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	334,010,454
Duplication proportion	0.65697
Proportion reads mapped	0.6284
Exon/intron ratio	3.0031
Unique read proportion	0.56607

**Bidirectionals**
Total # Tfit bidirectionals	29518
# Promoter Tfit bidirectionals	12762
# Intronic Tfit bidirectionals	8023
# Intergenic Tfit bidirectionals	6539
Total # dREG bidirectionals	52622
# Promoter dREG bidirectionals	8239
# Intronic dREG bidirectionals	23472
# Intergenic dREG bidirectionals	17126
Part of Tfit master merge?	True
Part of dREG master merge?	True