DBNascent | Samples

SRZ3223692 Sample ID 1063

**Data sources**
Paper identifier	Jager2016nuclear
SRP	SRP071728
Samples	SRR3223692
	SRR3223693

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	184 Mb
Stranded gene read counts	TXT file	932 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	epididymal white adipose tissue
Clone/Individual
Strain	C57BL/6
Genotype	Rev-erb-alpha -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	141,280,718
Duplication proportion	0.63195
Proportion reads mapped	0.572
Exon/intron ratio	2.85965
Unique read proportion	0.48195

**Bidirectionals**
Total # Tfit bidirectionals	30310
# Promoter Tfit bidirectionals	11275
# Intronic Tfit bidirectionals	8977
# Intergenic Tfit bidirectionals	7721
Total # dREG bidirectionals	37138
# Promoter dREG bidirectionals	9218
# Intronic dREG bidirectionals	15291
# Intergenic dREG bidirectionals	9852
Part of Tfit master merge?	True
Part of dREG master merge?	True