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SRZ3223694 Sample ID 1064
| Paper identifier | Jager2016nuclear |
| SRP accession | SRP071728 |
| GEO accession | GSE79168 |
| Samples | SRR3223694 |
| SRR3223695 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 225 Mb |
| Stranded gene read counts | TXT file | 935 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | epididymal white adipose tissue |
| Clone/Individual | |
| Strain | C57BL/6 |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Replicate information unclear |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 50 |
| Read depth after trimming | 182,564,671 |
| Duplication proportion | 0.64464 |
| Proportion reads mapped | 0.5554 |
| Exon/intron ratio | 3.01486 |
| Unique read proportion | 0.48104 |
| Total # Tfit bidirectionals | 31372 |
| # Promoter Tfit bidirectionals | 12184 |
| # Intronic Tfit bidirectionals | 9079 |
| # Intergenic Tfit bidirectionals | 7575 |
| Total # dREG bidirectionals | 38290 |
| # Promoter dREG bidirectionals | 9020 |
| # Intronic dREG bidirectionals | 15657 |
| # Intergenic dREG bidirectionals | 10401 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |