DBNascent | Samples

SRZ3223696 Sample ID 1065

**Data sources**
Paper identifier	Jager2016nuclear
SRP accession	SRP071728
GEO accession	GSE79168
Samples	SRR3223696
	SRR3223697

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	212 Mb
Stranded gene read counts	TXT file	934 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	inguinal white adipose tissue
Clone/Individual
Strain	C57BL/6
Genotype	Rev-erb-alpha -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	117,933,454
Duplication proportion	0.55671
Proportion reads mapped	0.6393
Exon/intron ratio	3.19353
Unique read proportion	0.5924

**Bidirectionals**
Total # Tfit bidirectionals	36848
# Promoter Tfit bidirectionals	13222
# Intronic Tfit bidirectionals	10361
# Intergenic Tfit bidirectionals	11040
Total # dREG bidirectionals	42719
# Promoter dREG bidirectionals	9331
# Intronic dREG bidirectionals	17798
# Intergenic dREG bidirectionals	12488
Part of Tfit master merge?	True
Part of dREG master merge?	True