DBNascent | Samples

SRZ3223698 Sample ID 1066

**Data sources**
Paper identifier	Jager2016nuclear
SRP accession	SRP071728
GEO accession	GSE79168
Samples	SRR3223698
	SRR3223699

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	314 Mb
Stranded gene read counts	TXT file	939 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	inguinal white adipose tissue
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	211,424,743
Duplication proportion	0.5991
Proportion reads mapped	0.5632
Exon/intron ratio	3.46801
Unique read proportion	0.59269

**Bidirectionals**
Total # Tfit bidirectionals	41517
# Promoter Tfit bidirectionals	15005
# Intronic Tfit bidirectionals	11189
# Intergenic Tfit bidirectionals	12966
Total # dREG bidirectionals	54165
# Promoter dREG bidirectionals	9326
# Intronic dREG bidirectionals	23446
# Intergenic dREG bidirectionals	17483
Part of Tfit master merge?	True
Part of dREG master merge?	True