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SRZ3477290 Sample ID 1183
| Paper identifier | Kaikkonen2017genome |
| SRP accession | SRP074423 |
| GEO accession | GSE81155 |
| Samples | SRR3477290 |
| SRR3477291 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 29 Mb |
| Organism | S. scrofa |
| Sample type | tissue |
| Cell type | myocardium (borderline ischemic) |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Three tissue types from different regions of the same heart in three pigs (replicates) that had surgically-induced infarctions |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 5 |
| Raw read length | 51 |
| Read depth after trimming | 16,108,319 |
| Duplication proportion | 0.86604 |
| Proportion reads mapped | 0.8625 |
| Exon/intron ratio | 49.209 |
| Unique read proportion | 0.17297 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |