DBNascent | Samples

SRZ3477292 Sample ID 1184

**Data sources**
Paper identifier	Kaikkonen2017genome
SRP accession	SRP074423
GEO accession	GSE81155
Samples	SRR3477292
	SRR3477293

**Technical details**
QC score	4
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	42 Mb
Stranded gene read counts	TXT file
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	S. scrofa
Sample type	tissue
Cell type	myocardium (borderline ischemic)
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Three tissue types from different regions of the same heart in three pigs (replicates) that had surgically-induced infarctions
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	5
Raw read length	51
Read depth after trimming	27,178,877
Duplication proportion	0.85828
Proportion reads mapped	0.8607
Exon/intron ratio	27.613
Unique read proportion	0.26217

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False