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SRZ3477298 Sample ID 1187
Paper identifier | Kaikkonen2017genome |
SRP accession | SRP074423 |
GEO accession | GSE81155 |
Samples | SRR3477298 |
SRR3477299 |
QC score | 5 |
Replicate | 2 |
Protocol | GRO-seq |
Library prep | circularization |
Spike-in | None |
Single/Paired end | single |
Raw strandedness | forward |
Reverse complemented? | False |
Mapped strandedness | forward |
Timecourse | False |
Control/Experimental | experimental |
Wildtype & Untreated? | False |
Outlier | No |
Unusable | No |
TDF visualization file | TDF file | 15 Mb |
Stranded gene read counts | TXT file | |
Unstranded bidirectional read counts | TXT file | |
Tfit bidirectional regions | BED file | |
dREG bidirectional regions | BED file | |
All data files | ZIP archive |
Organism | S. scrofa |
Sample type | tissue |
Cell type | myocardium (ischemic) |
Clone/Individual | |
Strain | |
Genotype | |
Construct |
Condition type | Treatment | Start time | End time | Duration |
no treatment | None | None | None |
Pipeline info and software versions | |
Sample notes | Three tissue types from different regions of the same heart in three pigs (replicates) that had surgically-induced infarctions |
Analysis notes |
Sample QC score | 5 |
Sample NRO score | 5 |
Raw read length | 51 |
Read depth after trimming | 14,828,423 |
Duplication proportion | 0.95666 |
Proportion reads mapped | 0.8175 |
Exon/intron ratio | 110.969 |
Unique read proportion | 0.05239 |
Total # Tfit bidirectionals | None |
# Promoter Tfit bidirectionals | None |
# Intronic Tfit bidirectionals | None |
# Intergenic Tfit bidirectionals | None |
Total # dREG bidirectionals | None |
# Promoter dREG bidirectionals | None |
# Intronic dREG bidirectionals | None |
# Intergenic dREG bidirectionals | None |
Part of Tfit master merge? | False |
Part of dREG master merge? | False |