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SRZ3477298 Sample ID 1187
| Paper identifier | Kaikkonen2017genome |
| SRP accession | SRP074423 |
| GEO accession | GSE81155 |
| Samples | SRR3477298 |
| SRR3477299 |
| QC score | 5 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 15 Mb |
| Organism | S. scrofa |
| Sample type | tissue |
| Cell type | myocardium (ischemic) |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Three tissue types from different regions of the same heart in three pigs (replicates) that had surgically-induced infarctions |
| Analysis notes |
| Sample QC score | 5 |
| Sample NRO score | 5 |
| Raw read length | 51 |
| Read depth after trimming | 14,828,423 |
| Duplication proportion | 0.95666 |
| Proportion reads mapped | 0.8175 |
| Exon/intron ratio | 110.969 |
| Unique read proportion | 0.05239 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |