SRZ3477298 Sample ID 1187

Data sources
Paper identifier Kaikkonen2017genome
SRP accession SRP074423
GEO accession GSE81155
Samples SRR3477298
SRR3477299
Technical details
QC score 5
Replicate 2
Protocol GRO-seq
Library prep circularization
Spike-in None
Single/Paired end single
Raw strandedness forward
Reverse complemented? False
Mapped strandedness forward
Timecourse False
Control/Experimental experimental
Wildtype & Untreated? False
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 15 Mb
Stranded gene read counts TXT file
Unstranded bidirectional read counts TXT file
Tfit bidirectional regions BED file
dREG bidirectional regions BED file
All data files ZIP archive
Cellular details
Organism S. scrofa
Sample type tissue
Cell type myocardium (ischemic)
Clone/Individual
Strain
Genotype
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
no treatment None None None
Extended notes
Pipeline info and software versions
Sample notes Three tissue types from different regions of the same heart in three pigs (replicates) that had surgically-induced infarctions
Analysis notes
Sample metrics
Sample QC score 5
Sample NRO score 5
Raw read length 51
Read depth after trimming 14,828,423
Duplication proportion 0.95666
Proportion reads mapped 0.8175
Exon/intron ratio 110.969
Unique read proportion 0.05239
Bidirectionals
Total # Tfit bidirectionals None
# Promoter Tfit bidirectionals None
# Intronic Tfit bidirectionals None
# Intergenic Tfit bidirectionals None
Total # dREG bidirectionals None
# Promoter dREG bidirectionals None
# Intronic dREG bidirectionals None
# Intergenic dREG bidirectionals None
Part of Tfit master merge? False
Part of dREG master merge? False