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SRZ354088 Sample ID 1820
| Paper identifier | Mckinlay2011genome |
| SRP accession | SRP009043 |
| GEO accession | GSE33136 |
| Samples | SRR354088 |
| SRR354089 |
| QC score | 5 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 4 Mb |
| Organism | S. cerevisiae |
| Sample type | organism |
| Cell type | whole yeast |
| Clone/Individual | |
| Strain | BY4742 |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | States that this is a 5' nuclear run-on RNA library, but fragmented before ligation |
| Analysis notes |
| Sample QC score | 5 |
| Sample NRO score | 1 |
| Raw read length | 36 |
| Read depth after trimming | 17,800,440 |
| Duplication proportion | 0.98613 |
| Proportion reads mapped | 0.8946 |
| Exon/intron ratio | 0.2915 |
| Unique read proportion | 0.01944 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |