Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRZ3734610 Sample ID 671
| Paper identifier | Emmett2017histone |
| SRP accession | SRP077663 |
| GEO accession | GSE83926 |
| Samples | SRR3734610 |
| SRR3734611 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 261 Mb |
| Stranded gene read counts | TXT file | 936 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | brown adipose tissue |
| Clone/Individual | |
| Strain | |
| Genotype | Hdac3 fl/fl |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | thermoneutrality (29 Celsius) | -14 day | 0 day | 14 day |
| Pipeline info and software versions | |
| Sample notes | Doesn't mention circularizing, but does mention polyA-tailing |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 242,424,254 |
| Duplication proportion | 0.66875 |
| Proportion reads mapped | 0.4849 |
| Exon/intron ratio | 2.90465 |
| Unique read proportion | 0.56897 |
| Total # Tfit bidirectionals | 33319 |
| # Promoter Tfit bidirectionals | 13340 |
| # Intronic Tfit bidirectionals | 9697 |
| # Intergenic Tfit bidirectionals | 8415 |
| Total # dREG bidirectionals | 43869 |
| # Promoter dREG bidirectionals | 9591 |
| # Intronic dREG bidirectionals | 19022 |
| # Intergenic dREG bidirectionals | 12512 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |