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SRZ3734612 Sample ID 672
| Paper identifier | Emmett2017histone |
| SRP accession | SRP077663 |
| GEO accession | GSE83926 |
| Samples | SRR3734612 |
| SRR3734613 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 103 Mb |
| Stranded gene read counts | TXT file | 925 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | brown adipose tissue |
| Clone/Individual | |
| Strain | |
| Genotype | Hdac3 fl/fl; adiponectin-Cre |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | thermoneutrality (29 Celsius) | -14 day | 0 day | 14 day |
| Pipeline info and software versions | |
| Sample notes | Doesn't mention circularizing, but does mention polyA-tailing |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 232,399,446 |
| Duplication proportion | 0.83913 |
| Proportion reads mapped | 0.4076 |
| Exon/intron ratio | 1.26647 |
| Unique read proportion | 0.24713 |
| Total # Tfit bidirectionals | 24913 |
| # Promoter Tfit bidirectionals | 10182 |
| # Intronic Tfit bidirectionals | 7847 |
| # Intergenic Tfit bidirectionals | 5023 |
| Total # dREG bidirectionals | 26882 |
| # Promoter dREG bidirectionals | 9206 |
| # Intronic dREG bidirectionals | 10048 |
| # Intergenic dREG bidirectionals | 5917 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |