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SRZ497904 Sample ID 921
| Paper identifier | Hah2011rapid |
| SRP accession | SRP013239 |
| GEO accession | GSE27463 |
| Samples | SRR497904 |
| SRR497905 | |
| SRR497906 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 33 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 1 Mb |
| dREG bidirectional regions | BED file | 337 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Also in SRM497904 |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 2 |
| Raw read length | 44 |
| Read depth after trimming | 10,041,858 |
| Duplication proportion | 0.44934 |
| Proportion reads mapped | 0.569 |
| Exon/intron ratio | 3.32287 |
| Unique read proportion | 0.48176 |
| Total # Tfit bidirectionals | 14934 |
| # Promoter Tfit bidirectionals | 4359 |
| # Intronic Tfit bidirectionals | 6971 |
| # Intergenic Tfit bidirectionals | 2551 |
| Total # dREG bidirectionals | 7858 |
| # Promoter dREG bidirectionals | 4517 |
| # Intronic dREG bidirectionals | 2435 |
| # Intergenic dREG bidirectionals | 1063 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |