DBNascent | Samples

SRZ497907 Sample ID 922

**Data sources**
Paper identifier	Hah2011rapid
SRP	SRP013239
Samples	SRR497907
	SRR497908
	SRR497909
	SRR497910

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	56 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	613 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Also in SRM497907
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	44
Read depth after trimming	16,536,277
Duplication proportion	0.44052
Proportion reads mapped	0.7114
Exon/intron ratio	2.44467
Unique read proportion	0.60278

**Bidirectionals**
Total # Tfit bidirectionals	26372
# Promoter Tfit bidirectionals	5894
# Intronic Tfit bidirectionals	13690
# Intergenic Tfit bidirectionals	5187
Total # dREG bidirectionals	14262
# Promoter dREG bidirectionals	5797
# Intronic dREG bidirectionals	5666
# Intergenic dREG bidirectionals	2880
Part of Tfit master merge?	True
Part of dREG master merge?	True