DBNascent | Samples

SRZ497914 Sample ID 924

**Data sources**
Paper identifier	Hah2011rapid
SRP	SRP013239
Samples	SRR497914
	SRR497915
	SRR497916

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	47 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	568 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-40 min	0 min	40 min

**Extended notes**
Pipeline info and software versions
Sample notes	Also in SRM497914
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	44
Read depth after trimming	12,521,985
Duplication proportion	0.42791
Proportion reads mapped	0.7825
Exon/intron ratio	2.69657
Unique read proportion	0.57826

**Bidirectionals**
Total # Tfit bidirectionals	23178
# Promoter Tfit bidirectionals	5992
# Intronic Tfit bidirectionals	11531
# Intergenic Tfit bidirectionals	4387
Total # dREG bidirectionals	13212
# Promoter dREG bidirectionals	5905
# Intronic dREG bidirectionals	5110
# Intergenic dREG bidirectionals	2360
Part of Tfit master merge?	True
Part of dREG master merge?	True