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SRZ497917 Sample ID 925
| Paper identifier | Hah2011rapid |
| SRP accession | SRP013239 |
| GEO accession | GSE27463 |
| Samples | SRR497917 |
| SRR497918 | |
| SRR497919 | |
| SRR497920 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | 17-beta-estradiol (100 nM) | -40 min | 0 min | 40 min |
| Pipeline info and software versions | |
| Sample notes | Also in SRM497917 |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 44 |
| Read depth after trimming | 14,116,209 |
| Duplication proportion | 0.45599 |
| Proportion reads mapped | 0.7306 |
| Exon/intron ratio | 2.6066 |
| Unique read proportion | 0.55835 |
| Total # Tfit bidirectionals | 22886 |
| # Promoter Tfit bidirectionals | 5428 |
| # Intronic Tfit bidirectionals | 11650 |
| # Intergenic Tfit bidirectionals | 4397 |
| Total # dREG bidirectionals | 12323 |
| # Promoter dREG bidirectionals | 5481 |
| # Intronic dREG bidirectionals | 4781 |
| # Intergenic dREG bidirectionals | 2204 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |