DBNascent | Samples

SRZ497917 Sample ID 925

**Data sources**
Paper identifier	Hah2011rapid
SRP	SRP013239
Samples	SRR497917
	SRR497918
	SRR497919
	SRR497920

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	47 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	529 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-40 min	0 min	40 min

**Extended notes**
Pipeline info and software versions
Sample notes	Also in SRM497917
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	44
Read depth after trimming	14,116,209
Duplication proportion	0.45599
Proportion reads mapped	0.7306
Exon/intron ratio	2.6066
Unique read proportion	0.55835

**Bidirectionals**
Total # Tfit bidirectionals	22886
# Promoter Tfit bidirectionals	5428
# Intronic Tfit bidirectionals	11650
# Intergenic Tfit bidirectionals	4397
Total # dREG bidirectionals	12323
# Promoter dREG bidirectionals	5481
# Intronic dREG bidirectionals	4781
# Intergenic dREG bidirectionals	2204
Part of Tfit master merge?	True
Part of dREG master merge?	True