DBNascent | Samples

SRZ497922 Sample ID 926

**Data sources**
Paper identifier	Hah2011rapid
SRP accession	SRP013239
GEO accession	GSE27463
Samples	SRR497922
	SRR497923

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	45 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	473 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-160 min	0 min	160 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	44
Read depth after trimming	20,451,531
Duplication proportion	0.61284
Proportion reads mapped	0.6093
Exon/intron ratio	3.08136
Unique read proportion	0.43408

**Bidirectionals**
Total # Tfit bidirectionals	19385
# Promoter Tfit bidirectionals	6107
# Intronic Tfit bidirectionals	9307
# Intergenic Tfit bidirectionals	2801
Total # dREG bidirectionals	11010
# Promoter dREG bidirectionals	6421
# Intronic dREG bidirectionals	3634
# Intergenic dREG bidirectionals	1274
Part of Tfit master merge?	True
Part of dREG master merge?	True