DBNascent | Samples

SRZ5109941 Sample ID 350

**Data sources**
Paper identifier	Bouvyliivrand2017analysis
SRP accession	SRP095085
GEO accession	GSE92375
Samples	SRR5109941
	SRR5679914
	SRR5679915
	SRR5679916

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	89 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	742 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	ESC
Clone/Individual	hESC9
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	40
Read depth after trimming	27,062,942
Duplication proportion	0.40674
Proportion reads mapped	0.8204
Exon/intron ratio	2.96258
Unique read proportion	0.65612

**Bidirectionals**
Total # Tfit bidirectionals	21998
# Promoter Tfit bidirectionals	9913
# Intronic Tfit bidirectionals	8437
# Intergenic Tfit bidirectionals	3804
Total # dREG bidirectionals	17245
# Promoter dREG bidirectionals	8578
# Intronic dREG bidirectionals	5799
# Intergenic dREG bidirectionals	3231
Part of Tfit master merge?	True
Part of dREG master merge?	True